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The Microbiome in Pets

You’ve probably heard the saying, “health starts in the gut”—and that’s just as true for our pets. Inside your dog or cat lives an invisible world of microorganisms, known as the microbiome, that plays a vital role in everything from digestion to immune balance and even allergy prevention. 

If your pet suffers from itchy skin, frequent ear infections, or food sensitivities, their microbiome might be out of balance.  

On this page:

What Is the Microbiome in Pets? 

The microbiome is a natural community of bacteria, fungi, and other microorganisms that live in and on your pet’s body—especially in the gut and on the skin. These microbes help with: 

  • Digestion and nutrient absorption
  • Training the immune system
  • Protecting against harmful pathogens
  • Keeping inflammation in check 

When the balance of good vs. bad microbes is disrupted (a condition called dysbiosis), it can lead to problems like food allergies, itchy skin, and chronic inflammation. 

Gut Health and Immune Support: Why It Matters for Allergies 

Most of your pet’s immune system lives in the gut, making gut health essential for a balanced immune response. A diverse and healthy microbiome helps prevent the immune system from overreacting to harmless things like pollen or food proteins. 

But when the gut microbiota is out of balance, the immune system can misfire—leading to allergic reactions. 

Key Microbiome-Immune Connections: 

  • Gut-Immune Communication: The gut microbiome helps “train” immune cells, keeping inflammation and allergies in check.
  • Dysbiosis and Allergies: Disrupted gut flora is linked to more severe symptoms in pets with atopic dermatitis and food allergies.
  • Research Insights: Studies show that pets (and even mice!) with an imbalanced microbiome develop more intense allergy symptoms than those with healthy gut flora. 
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The Gut–Skin Connection: How Digestive Health Affects Skin 

Did you know your pet’s gut health can directly impact their skin health? This link is called the gut-skin axis, and it’s especially important for pets with atopic dermatitis (a common skin allergy). 

Here’s how it works: 

  • Poor gut health → imbalance in the skin’s microbiome
  • Disrupted skin barrier → more irritation, inflammation, and infections
  • Research shows dogs with atopic dermatitis have fewer good skin microbes and more harmful bacteria like Staphylococcus, which worsens inflammation. 

A balanced microbiome—both in the gut and on the skin—can help protect your pet from itchy flare-ups, secondary infections, and constant scratching.  

Probiotics and Prebiotics support  

Probiotics are beneficial bacteria that help restore balance in the gut. Prebiotics are fibers that feed those good bacteria. 

Together, they can support a healthier immune response and reduce allergy symptoms. Research has shown that adding probiotics to your pet’s diet may ease skin inflammation and even prevent future allergic reactions.  

Linkskin Spray and Tablets are specially formulated to support pets with allergic skin conditions by restoring balance to the skin microbiome. They contain tyndallized (heat-inactivated) probiotics, including Lactobacillus rhamnosus and Lactobacillus reuteri, which: 

  • Help strengthen the skin’s natural defenses
  • Support a healthy microbial balance
  • Support reduction of flare-ups and relapses  

These inactivated probiotics don’t colonize the gut—but they do stimulate the immune system in a beneficial way. Studies show they help promote anti-inflammatory and protective responses, making them an adjuvant in the treatment of pets with allergies. 

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